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Professor Graham Richards is Chairman of Chemistry at Oxford and one of the world's leading figures in computational approaches to drug discovery. He is the author of over 300 scientific papers and 15 books. He was the scientific founder of Oxford Molecular Group Plc, now part of Pharmacopeia Inc. In 1998 he was presented with the Mullard Award from the Royal Society for his work on the development of computational methods for molecular design and their application.

Professor Graham Richards, Chairman of Chemistry at Oxford and Director of the Centre for Drug Discovery, said: "One in four people throughout the world contract some form of cancer, so nearly everyone will have a relative, friend or colleague who has suffered or is suffering from the disease. People now have the opportunity to make a positive impact on the disease by donating their unused computer power, which will enable us to accelerate our programme of research, and come up with many new molecular candidates that could be developed into cancer drugs."

Selected recent publications
Books

  1. Computational Chemistry, G.H. Grant and W.G. Richards, Oxford University Press (1995).
  2. Computer-aided molecular design, ed. W.G. Richards, IBC Press, (1989).
  3. QuantumPharmacology, W.G. Richards, Butterworths, London, 2nd edn. (1983).
Articles

Pattern recognition techniques in drug discovery.‹ ‹‹‹Richards, W. Graham; Robinson, Daniel D.‹‹‹ Department of Chemistry,‹ Oxford University,‹ Oxford OX1 3QT,‹ UK.‹‹‹ Abstr. Pap. - Am. Chem. Soc.‹ (2001),‹ 221st‹ COMP-027.‹ CODEN: ACSRAL‹ ISSN: 0065-7727.‹ Journal; Meeting Abstract‹ written in English.‹‹‹ AN 2001:199812‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Techniques developed in the area of artificial intelligence such as computer vision and object recognition can be adapted for use in computational chem. and drug discovery.‹ We present two examples.‹ Mol. alignment is a crucial first step in many deign projects.‹ This is particularly difficult if the structures are very diverse particularly with respect to size.‹ Nonetheless computer vision methods can handle the problem.‹ Another adaptation from medical imaging using a multiscale approach permits us to find binding sites on proteins.

Similarity Calculations Using Two-Dimensional Molecular Representations.‹ ‹‹‹Allen, Benjamin C. P.; Grant, Guy H.; Richards, W. Graham.‹‹‹ New Chemistry Laboratory,‹ University of Oxford,‹ Oxford,‹ UK.‹‹‹ J. Chem. Inf. Comput. Sci.‹ (2001),‹ 41(2),‹ 330-337.‹ CODEN: JCISD8‹ ISSN: 0095-2338.‹ Journal‹ written in English.‹‹‹ AN 2001:156265‹‹ ‹CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Mol. similarity calcns. are important for rational drug design.‹ Time constraints prevent these techniques being used on large data sets or on large mols.‹ By reducing the mol. representation to a two-dimensional form, the alignment of the mols. can be greatly speeded up.‹ The accuracy of the resulting similarity values can be improved by using a neural network.

Partial Molecular Alignment via Local Structure Analysis.‹ ‹‹‹Robinson, Daniel D.; Lyne, Paul D.; Richards, W. Graham.‹‹‹ Physical and Theoretical Chemistry Laboratory,‹ University of Oxford,‹ Oxford,‹ UK.‹‹‹ J. Chem. Inf. Comput. Sci.‹ (2000),‹ 40(2),‹ 503-512.‹ CODEN: JCISD8‹ ISSN: 0095-2338.‹ Journal‹ written in English.‹‹‹ CAN 132:202562‹‹‹ AN 2000:44083‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Mol. alignment remains as one of the most problematic aspects of mol. design.‹ A technique is introduced that facilitates the alignment of a range of structures that could not be handled easily using existing alignment procedures.‹ The flexibility of the method is illustrated with a series of test sets.‹ First, an alignment is performed on a series of mols. from a typical 3D-quant. structure-activity relation data set.‹ The results of this test show the technique to outperform many existing alignment methodologies based upon the optimization of mol. similarity or mol. overlaps.‹ This test set is then extended to consider the alignment of more structurally diverse inhibitors of HIV-1 reverse transcriptase and HIV-1 protease.‹ Finally, in the most challenging test, a large protein-based inhibitor is matched with a small-mol. mimic.‹ It is believed that the existence of such a versatile alignment technique will prove invaluable in the fields of mol. design and chem. information handling.

Molecular similarity.‹ ‹‹‹Richards, W. Graham; Robinson, Daniel D.‹‹‹ New Chemistry Laboratory,‹ Oxford University,‹ Oxford,‹ UK.‹‹‹ IMA Vol. Math. Its Appl.‹ (1999),‹ 108(Rational Drug Design),‹ 39-49.‹ CODEN: IVMAFU‹ Journal; General Review‹ written in English.‹‹‹ CAN 131:53425‹‹‹ AN 1999:259233‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 19 refs.‹ Mol. similarity aims to give a quant. answer to the question of how similar two given mols. are.‹ Such indexes are of use in drug design as aids to the creation of mol. mimics and in structure- activity studies or measures of mol. diversity.‹ Similarity is most often computed in terms of mol. shape or electrostatic potential.‹ The advent of combinatorial techniques and the use of high throughput synthesis have created a need for ever faster methods of computation.‹ Numerical calcn. has been superceded by anal. evaluation of integrals, but even faster methods are urgently needed.‹ This is esp. so if we can ever hope to take thousands of mols. and calc. the similarity between all pairs.‹ A promising technique is to use two-dimensional mol. representations and to utilize methodologies perfected in optical character recognition.

The design of novel acetylcholinesterase inhibitors using the multiple copy simultaneous search method.‹ ‹‹‹Castro, Ana; Richards, W. Graham; Lyne, Paul D.‹‹‹ New Chemistry Laboratory,‹ Oxford,‹ UK.‹‹‹ Med. Chem. Res.‹ (1999),‹ 9(2),‹ 98-107.‹ CODEN: MCREEB‹ ISSN: 1054-2523.‹ Journal‹ written in English.‹‹‹ CAN 131:53572‹‹‹ AN 1999:248892‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A novel series of imidazole derivs. are designed by application of the multiple copy simultaneous search technique as acetylcholinesterase inhibitors.‹ The resulting compds. are predicted to interact simultaneously with the catalytic site and a peripheral site.‹ Interaction energies are compared between existing inhibitors and the designed ligands, suggesting that these new compds. could bind better than known inhibitors.

Self-organizing molecular field analysis: a tool for structure-activity studies.‹ ‹‹‹Robinson, Daniel D.; Winn, Peter J.; Lyne, Paul D.; Richards, W. Graham.‹‹‹ Physical and Theoretical Chemistry Laboratory,‹ Oxford University,‹ Oxford,‹ UK.‹‹‹ J. Med. Chem.‹ (1999),‹ 42(4),‹ 573-583.‹ CODEN: JMCMAR‹ ISSN: 0022-2623.‹ Journal‹ written in English.‹‹ ‹CAN 130:276227‹‹‹ AN 1999:65866‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Self-organizing mol. field anal. (SOMFA) is a novel technique for three-dimensional quant. structure-activity relations (3D-QSAR).‹ It is simple and intuitive in concept and avoids the complex statistical tools and variable selection procedures favored by other methods.‹ Our calcns. show the method to be as predictive as the best 3D-QSAR methods available.‹ Importantly, steric and electrostatic maps can be produced to aid the mol. design process by highlighting important mol. features.‹ The simplicity of the technique leaves scope for further development, particularly with regard to handling mol. alignment and conformation selection. Here, the method has been used to predict the corticosteroid-binding globulin binding affinity of the "benchmark" steroids, expanded from the usual 31 compds. to 43 compds.‹ Test predictions have also been performed on a set of sulfonamide endothelin inhibitors.

Explicit calculation of 3D molecular similarity.‹ ‹‹‹Good, Andrew C.; Richards, W. Graham.‹‹‹ Glaxo Wellcome Medicines Research Center,‹ Stevenage,‹ UK.‹‹‹ Perspect. Drug Discovery Des.‹ (1998),‹ 9/10/11(3D QSAR in Drug Design: Ligand/Protein Interactions and Molecular Similarity),‹ 321-338.‹ CODEN: PDDDEC‹ ISSN: 0928-2866.‹ Journal; General Review‹ written in English.‹‹‹ CAN 129:81233‹‹‹ AN 1998:442468‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 86 refs. is given on techniques for quantifying explicit 3-dimensional mol. similarity, detailing their application, merits, and pitfalls including mol. properties, indexes, and protocols, from the comparison of MEP and shape for quant. structure activity relationship construction, through to the rapid anal. of pharmacophore triplet descriptors for diversity anal.

Use of reduced representations of proteins and small molecules.‹ ‹‹‹Richards, W. Graham; Robinson, Daniel D.‹‹‹ Physical and Theoretical Chemistry Laboratory,‹ Oxford,‹ UK.‹‹‹ Alfred Benzon Symp.‹ (1998),‹ 42(Rational Molecular Design in Drug Research),‹ 139-150.‹ CODEN: ABSYB2‹ ISSN: 0105-3639.‹ Journal‹ written in English.‹‹‹ CAN 129:75978‹‹‹ AN 1998:274058‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The 2D methods in mol. drug design are discussed.‹ In general, there is a good agreement between the 2D methods and a high correlation with the 3D results.‹ This confirms that the 2D methods are adequate for similarity studies.‹ It does not take too much imagination to envisage a database of mols. being searched for similarity to some lead being conducted with a similar rapidity providing a powerful tool to exploit combinatorial chem.

Theoretical calculation of partition coefficients.‹ ‹‹‹Richards, W. Graham.‹‹‹ Physical and Theoretical Chemistry, Oxford University,‹ Oxford,‹ UK.‹‹‹ Methods Princ. Med. Chem.‹ (1996),‹ 4(Lipophilicity in Drug Action and Toxicology),‹ 173-180.‹ CODEN: MPMCE3‹ Journal; General Review‹ written in English.‹‹‹ CAN 127:214415‹‹‹ AN 1997:535905‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review, with 10 refs. on tools for calcg. partition coeffs.‹ Statistical thermodn., equil. consts., free energy perturbation calcns., partition coeffs., and membrane simulations are discussed.

Molecular similarity and dissimilarity.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chemistry Lab.,‹ Oxford Univ.,‹ Oxford,‹ UK.‹‹‹ Mol. Eng.‹ (1995),‹ 5(1-3),‹ 229-323.‹ CODEN: MOLEEV‹ Journal; General Review‹ written in English.‹‹‹ CAN 123:131789‹‹‹ AN 1995:697130‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 12 refs.‹ Mol. similarity provides a quant. measure of the resemblance of mols.‹ It is of use in the design of mimetics and in finding relationships between biol. activity and mol. properties which incorporate three-dimensional features.‹ Dissimilarity between enantiomeric forms can rationalize the relative potencies of optical isomers.

Molecular similarity and dissimilarity.‹ ‹‹‹Richards, W. Graham.‹‹‹ Physical Chemistry Laboratory,‹ Oxford University,‹ Oxford,‹ UK.‹‹‹ Jerusalem Symp. Quantum Chem. Biochem.‹ (1995),‹ 27‹ 365-9.‹ CODEN: JSQCA7‹ ISSN: 0075-3696.‹ Journal; General Review‹ written in English.‹‹‹ CAN 123:101836‹‹‹ AN 1995:690595‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 12 refs.‹ Mol. similarity provides a quant. measure of the resemblance of mols.‹ It is of use in the design of mimetics and in finding relationships between biol. activity and mol. properties which incorporate three-dimensional features.‹ Dissimilarity between enantiomeric forms can rationalize the relative potencies of optical isomers.

Shape similarity as a single independent variable in QSAR.‹ ‹‹‹Seri-Levy, A.; Salter, R.; West, S.; Richards, W. G..‹‹‹ Phys. Chem. Lab.,‹ Oxford,‹ UK.‹‹‹ Eur. J. Med. Chem.‹ (1994),‹ 29(9),‹ 687-94.‹ CODEN: EJMCA5‹ ISSN: 0223-5234.‹ Journal‹ written in English.‹‹‹ CAN 122:23232‹‹‹ AN 1995:239258‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The use of shape similarity as a single independent variable in QSAR equations is demonstrated for the inhibition of dihydrofolate reductase (DHFR) and for central hypotensive activity.‹ The predictive ability of these shape similarity QSAR equations is higher than that of the equiv. multivariate QSAR equations.

Theoretical chemistry in drug discovery.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford Univ.,‹ UK.‹ Editor(s): Nascimento, Marco Antonio Chaer.‹‹‹ Mol. Model. Chem. XXI Century, [Mater. Meet.]‹ (1994),‹ Meeting Date 1992,‹‹‹‹ 43-56.‹ Publisher: World Sci.,‹ Singapore, Singapore‹ CODEN: 60KZAX‹ Conference; General Review‹ written in English.‹‹‹ CAN 121:291716‹‹‹ AN 1994:691716‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 18 refs.‹ The role of theor. chem. (quantum mechanics, etc.) in drug disign is discussed.‹ Cases in which the drug receptor structure is known (from e.g. crystallog.), in which the receptor structure is predicted from theor. methods, an in which the receptor remains an unknown macromol. are sep. considered.

Predictive modeling of the 3-D structure of interleukin-13.‹ ‹‹‹Bamborough, Paul; Duncan, David; Richards, W. Graham.‹‹‹ Physical Chemistry Laboratory,‹ Oxford Centre for Molecular Science,‹ Oxford,‹ UK.‹‹‹ Protein Eng.‹ (1994),‹ 7(9),‹ 1077-82.‹ CODEN: PRENE9‹ ISSN: 0269-2139.‹ Journal‹ written in English.‹‹‹ CAN 121:253376‹‹‹ AN 1994:653376‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Several at. structures are now available for the family of helical cytokines, which includes growth hormone as well as many of the interleukins.‹ Using structural information from 5 members of this family, 2 alternative models of interleukin (IL)-13 are proposed.‹ IL-13 has biol. properties similar to those of IL-4 and, like the other interleukins, is a potentially important pharmaceutical target.‹ The model of IL-13 is discussed and compared with the known interleukin structures.

Theoretical chemistry in drug discovery.‹ ‹‹‹Richards, W. G..‹‹‹ Phys. Chem. Lab.,‹ Oxford Univ.,‹ Oxford,‹ UK.‹‹‹ Eur. J. Med. Chem.‹ (1994),‹ 29(7-8),‹ 499-502.‹ CODEN: EJMCA5‹ ISSN: 0223-5234.‹ Journal; General Review‹ written in English.‹‹‹ CAN 121:220874‹‹‹ AN 1994:620874‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review, with 19 refs., of the application of theor. chem. in drug discovery.

Computer-aided drug design.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chemistry Laboratory,‹ Oxford Univ.,‹ Oxford,‹ UK.‹‹‹ Pure Appl. Chem.‹ (1994),‹ 66(8),‹ 1589-96.‹ CODEN: PACHAS‹ ISSN: 0033-4545.‹ Journal; General Review‹ written in English.‹‹‹ CAN 121:220872‹‹‹ AN 1994:620872‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 21 refs.‹ Two distinct approaches are possible in the area of computer-aided drug design.‹ If the mol. structure of the target macromol. is known the methods are obvious and direct and have achieved a high level of sophistication.‹ That area may be extended by using computational techniques to predict protein structure as illustrated here by the interleukin-4-receptor.‹ When the only led is a set of known active compds. or knowledge of a biochem. transformation which is to be interrupted, then the path is less direct.‹ Currently favored tactics include the use of mol. similarity methods and the employment of neural networks.‹ Recent advances include the prediction of the relative potency of different chiral forms of drugs.

Molecular Similarity, Quantitative Chirality, and QSAR for Chiral Drugs.‹ ‹‹‹Seri-Levy, Alon; West, Susan; Richards, W. Graham.‹‹‹ Physical Chemistry Laboratory,‹ Oxford,‹ UK.‹‹‹ J. Med. Chem.‹ (1994),‹ 37(11),‹ 1727-32.‹ CODEN: JMCMAR‹ ISSN: 0022-2623.‹ Journal‹ written in English.‹‹‹ CAN 120:315184‹‹‹ AN 1994:315184‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The current policy of drug regulatory authorities demanding that pharmaceutical companies justify their reasons for preferring drugs contg. a mixt. of enantiomers over one stereoisomer increases the importance of quant. structure-activity relations (QSARs) for chiral drugs.‹ The QSAR proposed by Pfeiffer for chiral drug enantiomer potencies was brought into question by the existence of sets obeying an anti-Pfeiffer rule.‹ Using computer-aided mol. design methods and treating chirality not as an existing/nonexisting property but as a continuous one improve the QSAR proposed by Pfeiffer, yielding higher correlation coeffs. and an independent ordinate.‹ Calcd. shape similarities reveal the details of the Pfeiffer behavior and the source of the anti-Pfeiffer behavior.‹ Consequently revised models for the D2 and s receptor are suggested.

QSAR's from similarity matrices. Technique validation and application in the comparison of different similarity evaluation methods.‹ ‹‹‹Good, Andrew C.; Peterson, Stephen J.; Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Univ. Oxford,‹ Oxford,‹ UK.‹‹‹ J. Med. Chem.‹ (1993),‹ 36(20),‹ 2929-37.‹ CODEN: JMCMAR‹ ISSN: 0022-2623.‹ Journal‹ written in English.‹‹‹ CAN 120:124107‹‹ ‹AN 1994:124107‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

It has recently been shown that good quant. structure-activity relationships can be obtained through statistical anal. of mol. similarity matrixes.‹ Here we extend the technique to seven addnl. mol. series, previously studied using Comparative Mol. Field Anal. (CoMFA) methodol.‹ The results are used to confirm technique applicability across a wider range of QSAR problems and to compare quant. the ability of various similarity indexes to describe biol. systems.‹ The relative merits of this technique in comparison to CoMFA are discussed.

Chiral drug potency: Pfeiffer's rule and computed chirality coefficients.‹ ‹‹‹Seri-Levy, Alon; Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford,‹ UK.‹‹‹ Tetrahedron:‹ Asymmetry‹ (1993),‹ 4(8),‹ 1917-23.‹ CODEN: TASYE3‹ ISSN: 0957-4166.‹ Journal‹ written in English.‹‹‹ CAN 119:262014‹‹‹ AN 1993:662014‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Since the thalidomide tragedy there has been an increased awareness of the potential dangers of using racemic drugs.‹ Pharmaceutical companies are required to justify each decision to manuf. a racemic drug in preference to its homochiral version.‹ This process of justification is both time-consuming and costly.‹ Any method for its simplification would be most valuable.‹ The computer-aided mol. design method suggested here, based on the method of C.C. Pfeiffer (1956), produces a sensitive quant. structure-activity relation between the potency ratios of drug enantiomers and a computed chirality coeff. defined as (1 - mol. similarity).‹ The advantage of this correlation is that it permits the explanation of previous exptl. results and also the prediction of the potency of new drugs within a series.‹ The method is illustrated by using a series of muscarinic 1,3-dioxolanes and a series of S-alkyl p-nitrophenyl methylphosphonothiolates which react with cholinesterase receptors.

Computers in drug design.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford,‹ UK.‹‹‹ Pure Appl. Chem.‹ (1993),‹ 65(2),‹ 231-4.‹ CODEN: PACHAS‹ ISSN: 0033-4545.‹ Journal; General Review‹ written in English.‹‹‹ CAN 118:160346‹‹‹ AN 1993:160346‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 13 refs.‹ Computational techniques may be used to aid the process of drug discovery both when the target macromol. is of unknown structure and when it is understood in at. detail.‹ Methods include measures of mol. shape; mol. similarity; quantum, statistical and mol. mechanics; mol. dynamics; Monte Carlo calcns. and mol. graphics.

Computer-aided drug discovery.‹ ‹‹‹Richards, W. Graham.‹‹‹ Oxford Cent. Mol.,‹ Oxford,‹ UK.‹‹‹ Proc. - R. Soc. Edinburgh, Sect. B:‹ Biol. Sci.‹ (1992),‹ 99(1-2),‹ 105-11.‹ CODEN: PRSSDP‹ ISSN: 0269-7270.‹ Journal; General Review‹ written in English.‹‹‹ CAN 118:24‹‹‹ AN 1993:24‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 16 refs.‹ The role of computers in drug discovery depends on just how much is known about the target macromol.‹ If at. detail of the receptor is known, binding free energy differences between drug variants may be computer.‹ Major effort is being expended in extending the area of applicability of such studies by predicting protein structure based on homologies with known protein crystal data.‹ Where no target structure is available, computational methods can provide leads by defining transition state structures and then using the approach of mol. similarity to define stable mimics to act as blockers.

A linear molecular similarity index.‹ ‹‹‹Reynolds, Christopher A.; Burt, Catherine; Richards, W. Graham.‹‹‹ Dep. Chem. Biol. Chem.,‹ Univ. Essex,‹ Colchester,‹ UK.‹‹‹ Quant. Struct.-Act. Relat.‹ (1992),‹ 11(1),‹ 34-5.‹ CODEN: QSARDI‹ ISSN: 0931-8771.‹ Journal‹ written in English.‹‹‹ CAN 117:19930‹‹‹ AN 1992:419930‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Mol. similarity is a tool for rationalizing the biol. activities of potential drug mols.‹ The most useful form of mol. similarity calcns. are usually based upon the mol. electrostatic potential and generally use formulae due to Carbo or Hodgkin but these formulae do not give a similarity index which varies linearly with mol. electrostatic potential.‹ Consequently, a new linear index has been proposed and the potential advantages of this index are discussed.

Fast drug-receptor mapping by site-directed distances:‹ a novel method of predicting new pharmacological leads.‹ ‹‹‹Smellie, Andrew S.; Crippen, G. M.; Richards, W. G..‹‹‹ BioCAD Corp.,‹ Mountain View,‹ CA,‹ USA.‹‹‹ J. Chem. Inf. Comput. Sci.‹ (1991),‹ 31(3),‹ 386-92.‹ CODEN: JCISD8‹ ISSN: 0095-2338.‹ Journal‹ written in English.‹‹‹ CAN 115:84822‹‹‹ AN 1991:484822‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The searching and characterization of large chem. databases has recently provoked much interest, particularly with respect to the question of whether any of the compds. in the database could serve as new leads to a compd. of pharmacol. interest.‹ This study introduces a fast and novel method of detg. whether any of a given series of compds. are able, on geometrical grounds, to interact with an active site of interest.‹ The C program written to implement the method is able to make a qual. prediction for a given compd. in about 1 s per structure (for drug-sized mols.), while still permitting the compd. complete conformational freedom.‹ However, the algorithm is sufficiently flexible to permit distance constraints to be placed on the mols. while docking.‹ The test system studied was a family of Baker's triazines docking into the active site of dihydrofolate reductase (DHFR), as defined by a methotrexate-NADPH complex.

Relative partition coefficients from partition functions:‹ a theoretical approach to drug transport.‹ ‹‹‹Essex, Jonathan W.; Reynolds, Christopher A.; Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford Cent. Mol. Sci.,‹ Oxford,‹ UK.‹‹‹ J. Chem. Soc., Chem. Commun.‹ (1989),‹‹ (16),‹ 1152-4.‹ CODEN: JCCCAT‹ ISSN: 0022-4936.‹ Journal‹ written in English.‹‹‹ CAN 111:126410‹‹‹ AN 1989:526410‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The free-energy perturbation method was applied to the calcn. of the difference in partition coeffs. (P) between MeOH and EtOH partitioned between H2O and CCl4.‹ The calcd. and exptl. values agreed to within 0.06 log P unit.

Rational drug design:‹ binding free energy differences of carbonic anhydrase inhibitors.‹ ‹‹‹Menziani, M. Cristina; Reynolds, Christopher A.; Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford Univ.,‹ Oxford,‹ UK.‹‹‹ J. Chem. Soc., Chem. Commun.‹ (1989),‹‹ (13),‹ 853-5.‹ CODEN: JCCCAT‹ ISSN: 0022-4936.‹ Journal‹ written in English.‹‹‹ CAN 111:89800‹‹‹ AN 1989:489800‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

The free energy perturbation method has been applied to calc. the binding energy of sulfonamide inhibitors of carbonic anhydrase; agreement with exptl. data gives further evidence for the reliability of this method even for anionic inhibitors and supports its use in drug design.

Computer-aided molecular design.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford Univ.,‹ Oxford,‹ UK.‹‹‹ Sci. Prog. (Oxford)‹ (1988),‹ 72(288),‹ 481-92.‹ CODEN: SCPRAY‹ ISSN: 0036-8504.‹ Journal‹ written in English.‹‹‹ CAN 110:211665‹‹‹ AN 1989:211665‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

In the pharmaceutical industry and elsewhere, the role of computer-aided mol. design has developed into a powerful set of methods involving both the display of mols. and their properties on graphics devices and the calcn. of mol. properties.‹ Many mols. are designed to bind to specific receptor sites on macromols. so the design aspect is simplest when the mol. structures of both binding partners are known.‹ In such cases, questions of fit and of binding energy are paramount.‹ Where the macromol. structure is unknown, it may be inferred from a knowledge of transition states which again can be derived from theor. calcns.

Molecular similarity.‹ ‹‹‹Richards, W. Graham; Hodgkin, Edward E.‹‹‹ Phys. Chem. Lab.,‹ Univ. Oxford,‹ Oxford,‹ UK.‹‹‹ Chem. Br.‹ (1988),‹ 24(11),‹ 1141, 1143-4.‹ CODEN: CHMBAY‹ ISSN: 0009-3106.‹ Journal; General Review‹ written in English.‹‹‹ CAN 110:17901‹‹‹ AN 1989:17901‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review, with 12 refs., discussing means for detg. how similar 1 mol. is to another, e.g., for QSAR studies on drug design.

Quantum chemistry in drug design.‹ ‹‹‹Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Oxford,‹ UK.‹‹‹ Pure Appl. Chem.‹ (1988),‹ 60(2),‹ 277-9.‹ CODEN: PACHAS‹ ISSN: 0033-4545.‹ Journal; General Review ‹written in English.‹‹‹ CAN 108:142663‹‹‹ AN 1988:142663‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

A review with 11 refs. examg. the use of quantum chem. in the design of tumor-selective antifolates and transition state analogs.

Molecular similarity in terms of valence electron density.‹ ‹‹‹Bowen-Jenkins, Philippa E.; Richards, W. Graham.‹‹‹ Phys. Chem. Lab.,‹ Univ. Oxford,‹ Oxford,‹ UK.‹‹‹ J. Chem. Soc., Chem. Commun.‹ (1986),‹‹ (2),‹ 133-5.‹ CODEN: JCCCAT‹ ISSN: 0022-4936.‹ Journal‹ written in English.‹‹‹ CAN 105:41963‹‹‹ AN 1986:441963‹‹‹ CAPLUS‹‹ (Copyright 2001 ACS)‹

Abstract

Ab initio comparison of the valence electron d. of mols. provides a quant. measure of their similarity which conforms with qual. ideas of bioisosterism.‹ The technique may provide a useful criterion in mol. and pharmaceutical design.

 

Professor W G Richards

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